生物软件，会用这个就够了
Format
Extensions
Data types
Common sources
BED
*.bed
Annotations
UCSC
Common Assembly Format
*.caf
Contigs
Sequencher
Clustal
*.aln
Alignments
ClustalX
CSFASTA
*.csfasta
Color space FASTA
ABI SOLiD
DNAStar
*.seq, *.pro
Nucleotide & protein sequences
DNAStar
DNA Strider
*.str
Sequences
DNA Strider (Mac program), ApE
Embl/UniProt
*.embl, *.swp
Sequences
Embl, UniProt
Endnote (8.0 or 9.0) XML
*.xml
Journal article references
Endnote,Journal article websites
FASTA
*.fasta, *.fas, etc.
Sequences, alignments
PAUP*,ClustalX, BLAST, FASTA
FASTQ
*.fastq, *.fasq
Sequences with quality
Solexa/Illumina
GCG
*.seq
Sequences
GCG
GenBank
*.gb, *.xml
Nucleotide & protein sequences
GenBank
Geneious
*.xml, *.geneious
Preferences, databases
Geneious
Geneious Education
*.tutorial.zip
Tutorial, assignment etc.
Geneious
GFF
*.gff
Annotations
Sanger Artemis
MEGA
*.meg
Alignments
MEGA
Molecular structure
*.pdb, *.mol, *.xyz, *.cml,
*.gpr, *.hin, *.nwo
3D molecular structures
3D structure databases and programs
Newick
*.tre, *.tree, etc.
Phylogenetic trees
PHYLIP, Tree-Puzzle, PAUP*, ClustalX
Nexus
*.nxs, *.nex
Trees, Alignments
PAUP*, Mesquite, MrBayes & MacClade
PDB
*.pdb
3D Protein structures
SP3, SP2, SPARKS, Protein Data Bank
Documents, presentations
Adobe Writer, LATEX, Miktex
Phrap ACE
*.ace
Contig assemblies
Phrap/Consed
PileUp
*.msf
Alignments
pileup (gcg)
PIR/NBRF
*.pir
Sequences, alignments
NBRF PIR
Qual
*.qual
Quality file
Associated with a FASTA file
Raw sequence text
*.seq
Sequences
Any file that contains only a sequence
Rich Sequence Format
*.rsf
Sequences, alignments
GCGs NetFetch
Comma/Tab Separated Values
*.csv, *.tsv
Spreadsheet files
Microsoft Excel
SAM/BAM
*.sam, *.bam
Contigs
SAMtools
Sequence Chromatograms
*.ab1, *.scf
Raw sequencing trace & sequence
Sequencing machines
VCF
*.VCF
Annotations
1000 Genomes Project
Vector NTI sequence
*.gb, *.gp
Nucleotide & protein sequences
Vector NTI
Vector NTI/AlignX alignment
*.apr
Alignments
Vector NTI, AlignX
Vector NTI Archive
*.ma4, *.pa4, *.oa4,
Nucleotide & protein sequences,
*.ea4, *.ca6
enzyme sets and publications
Vector NTI
Vector NTI/ContigExpress
*.cep
Nucleotide sequence assemblies
Vector NTI
Vector NTI database
VNTI Database
Nucleotide & protein sequences,
enzyme sets and publications
Vector NTI
Data type
Export format options
DNA sequence
FASTA, Genbank XML, Genbank flat, Geneious
Amino acid sequence
FASTA, Genbank XML, Genbank flat, Geneious
Chromatogram sequence
ABI, Geneious
Sequence with quality
FastQ, Qual, Geneious
Annotation
GFF, BED, Geneious
Multiple sequence alignment
Phylip, FASTA, NEXUS, MEGA, Geneious
Assembly
Phrap ACE, Geneious, SAM/BAM
Phylogenetic tree
Phylip, FASTA, NEXUS, Newick, MEGA, Geneious
PDF document
PDF, Geneious
Publication
EndNote 8.0, Geneious
Graphs
CSV, WIG
Document Properties
CSV, TSV, Geneious
文件种类包括序列文件、引物文件、酶文件、染色体文件、contig、蛋白序列、发育树、3D结构、序列比对文件、文章、pdf、其他
